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08 August 2023

Versions:

Dictionary: v0.2.1-9-g520a259 (nesi_2023_05_08)

Submission (sheepdog): v2023.06

Portal: v5

Internal:

indexd: 2023.06

fence: 2022.05

arborist: 2023.06

peregrine: 2023.06

sheepdog: 2023.6

guppy: 2023.06

elastic search: oss:6.8.23

pidgin: 2023.06

nginx: 2023.06 (from quay.io/cdis/nginx)

tube: 2022.05

gen3-spark: 2023.06

NeSI metadata service: v4.2

postgres 14.4

Note: JupyterHub, Kibana are not used and not updated

New and Improved

  • New portal version aligned with GEN3

  • New datasets added

    • AGDR00037
      • Geoghegan, J. (2023). Total infectome investigation of diphtheritic stomatitis in yellow-eyed penguins (Megadyptes antipodes) reveals a novel and abundant megrivirus [Data set]. Aotearoa Genomic Data Repository. https://doi.org/10.57748/Q06Y-6653
    • AGDR00035

Fixes

  • open to collaborate page email address: the recipient is now getting populated in an email client

  • https://test.agdr.org.nz/TAONGA-KAKAPO official project page now opens in a separate tab

  • Removing the starting G in "GKakapo125+ genome sequencing"

(Note: Repo.data.nesi.org.nz was updated on the 3rd of August with the following version differences: indexd 2022.05 and peregrine: 2022.05)